sovabids.datasets

Module with dataset utilities.

Module Contents

Functions

lemon_prepare()

Download and prepare a few files of the LEMON dataset.

lemon_bidscoin_prepare(src_path)

Download and prepare a few files of the LEMON dataset to be used with BIDSCOIN.

make_dummy_dataset(PATTERN='T%task%/S%session%/sub%subject%_%acquisition%_%run%', DATASET='DUMMY', NSUBS=2, NSESSIONS=2, NTASKS=2, NACQS=2, NRUNS=2, NCHANNELS=2, SFREQ=200, STOP=10, NUMEVENTS=10, PREFIXES={'subject': 'SU', 'session': 'SE', 'task': 'TA', 'acquisition': 'AC', 'run': 'RU'}, ROOT=None)

Create a dummy dataset given some parameters.
sovabids.datasets.lemon_prepare()[source]

Download and prepare a few files of the LEMON dataset.

Notes

See the LEMON dataset .

sovabids.datasets.lemon_bidscoin_prepare(src_path)[source]

Download and prepare a few files of the LEMON dataset to be used with BIDSCOIN.

Parameters

src_path (str) – The path where the BIDSCOIN-ready LEMON files will be

See also

datasets.lemon_prepare

sovabids.datasets.make_dummy_dataset(PATTERN='T%task%/S%session%/sub%subject%_%acquisition%_%run%', DATASET='DUMMY', NSUBS=2, NSESSIONS=2, NTASKS=2, NACQS=2, NRUNS=2, NCHANNELS=2, SFREQ=200, STOP=10, NUMEVENTS=10, PREFIXES={'subject': 'SU', 'session': 'SE', 'task': 'TA', 'acquisition': 'AC', 'run': 'RU'}, ROOT=None)[source]

Create a dummy dataset given some parameters.

Parameters

  • PATTERN (str, optional) – The pattern in placeholder notation using the following fields: %dataset%, %task%, %session%, %subject%, %run%, %acquisition%

  • DATASET (str, optional) – Name of the dataset.

  • NSUBS (int, optional) – Number of subjects.

  • NSESSIONS (int, optional) – Number of sessions.

  • NTASKS (int, optional) – Number of tasks.

  • NACQS (int, optional) – Number of acquisitions.

  • NRUNS (int, optional) – Number of runs.

  • NCHANNELS (int, optional) – Number of channels.

  • SFREQ (float, optional) – Samplinf frequency of the data.

  • STOP (float, optional) – Time duration of the data in seconds.

  • NUMEVENTS (int, optional) – Number of events along the duration.

  • PREFIXES (dict, optional) – Dictionary with the following keys:’subject’, ‘session’, ‘task’ and ‘acquisition’. The values are the corresponding prefix. RUN is not present because it has to be a number.

  • ROOT (str, optional) – Path where the files will be generated. If None, the _data subdir will be used.